Integrating microarray-based spatial
Nettet18. jul. 2024 · Cancer molecular subtyping (describing cancer subtypes) is important not least because of its potential relevance to choice of treatment [1,2].In the case of Colon Cancer, classifications of colorectal cancers (CRC) can be subdivided into 3–6 subtypes, based on gene expression profiles [1,2,3,4].Alternatively, CRC has been shown to … NettetWe combine a microarray-based spatial transcriptomics method that reveals spatial patterns of gene expression using an array of spots, each capturing the transcriptomes …
Integrating microarray-based spatial
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Nettet3. mar. 2024 · However, deciphering the neoplastic subtypes and their spatial organization is still challenging. Here, we combine single-nucleus RNA sequencing (snRNA-seq) with a microarray-based spatial transcriptomics (ST) to identify cell populations and their spatial distribution in breast cancer tissues. Nettet13. jan. 2024 · Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas Relations BioSample SAMN08685560 SRA SRX3781551
NettetMoncada, R. et al. Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas. Nat. Biotechnol.38, 333–342 (2024). Chen, W. T. et al. Spatial transcriptomics and in situ sequencing to study Alzheimer’s disease. Cell182, 976–991 e919 (2024). Nettet2 dager siden · Huizhou villages are representatives of traditional villages and have a high historical, cultural, and tourism value. In view of the problems of low commercial efficiency due to the small scale of commercial space and the imperfect layout in Longchuan Village, Jixi County, Xuancheng City, Anhui Province, this research explores the spatial …
http://ch.whu.edu.cn/en/article/doi/10.13203/j.whugig20240278 Nettet3. jun. 2024 · Background: Research on spatiotemporal gene landscape can provide insights into the spatial characteristics of human kidney development and facilitate kidney organoid cultivation. Here, we profiled the spatiotemporal gene programs of the human embryonic kidneys at 9 and 18 post-conception weeks (PCW) by integrating the …
Nettet8. sep. 2024 · An upsurge in Taiwan-based Mazu temple buildings has been observed in China (Tianjin, Kunshan, and Xiamen, etc.) recently. This paper applies qualitative research methods, including participatory observation and semi-structured interviews, to explore the development of Mazu temples in Tianjin, Kunshan, and Xiamen, China in …
Nettet3. des. 2024 · Through this model, Noah data is downscaled to 9km to fill the vacant area. As for some areas that have not been filled, Noah data is used for fitting, interpolation and filling, and the residual correction is further carried out based on Poisson equation method, and then the spatio-temporal seamless 9km daily soil moisture data is generated. cufflinks business casualTo integrate the scRNA-seq and ST datasets, we developed MIA. This analysis proceeds by first delineating sets of cell type-specific and tissue region-specific genes and then determining whether their overlap is higher (enrichment) or lower (depletion) than expected by chance. In the scRNA-seq data, we … Se mer We first processed fresh primary PDAC tumors from two untreated patients—PDAC-A and PDAC-B—for parallel scRNA-seq and ST analysis (Fig. 1a and see Methods). The scRNA-seq data consisted of cells … Se mer To generate unbiased transcriptomic maps of the tissue sections, we mounted cryosections of the two unfixed PDAC tissues originating from the same tumor sample onto the spatially barcoded ST microarray slides (see … Se mer One of the most useful aspects of scRNA-seq is its ability to reveal distinct subpopulations within cell types. We thus sought to characterize … Se mer We found two cancer cell populations in the PDAC-A scRNA-seq data that appeared to be both genetically and transcriptionally distinct … Se mer eastern european shops near meNettet11. apr. 2024 · Integrating spatial configuration into heatmap regression based CNNs for landmark localization Nightmare004 于 2024-04-11 13:02:55 发布 收藏 分类专栏： 深度学习 文章标签： 深度学习 关键点检测 cufflinks button coversNettet1. mar. 2024 · We combine a microarray-based spatial transcriptomics method that reveals spatial patterns of gene expression using an array of spots, each capturing the transcriptomes of multiple adjacent... eastern european river cruises 2023NettetAddressing this need, researchers have developed integration methods to combine spatial transcriptomic data with single-cell RNA-seq data to predict the spatial distribution of undetected transcripts and/or perform cell type deconvolution of spots in … eastern european round bread bagel likeNettet1. feb. 2024 · Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas Nat Biotechnol (2024) F. Roudnicky et al. Characterization of tumor blood vasculature expression of human invasive bladder cancer by laser capture microdissection and transcriptional … eastern european restaurants in houstonNettet5. feb. 2024 · Array-based spatial transcriptomics ... are generally sampled from a mixture of cells which may be homo or heterogeneous. While widely used microarray-based ST techniques utilize 50–100 um spot diameters (10 ... Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ... eastern european shepherd